Title
Crystal structure of the PDZD8 coiled-coil domain - Rab7 complex
Method
X-RAY DIFFRACTION; 2.1 Å
Target Sequence
Sequence
Target Structure
Chain C
Quaternary State
HETERO-Oligomer
Oligo Target Structure
Biounit 1

Submitted model details

1
133
Structure (9 - 114, 106 res.)
Robetta, model-1 (1 - 133)
Robetta, model-2 (1 - 133)
Robetta, model-3 (1 - 133)
Robetta, model-4 (1 - 133)
Robetta, model-5 (1 - 133)
Phyre2, model-1 (34 - 112)
RoseTTAFold, model-1 (1 - 133)
RoseTTAFold, model-2 (1 - 133)
RoseTTAFold, model-3 (1 - 133)
RoseTTAFold, model-4 (1 - 133)
RoseTTAFold, model-5 (1 - 133)
SWISS-MODEL, model-1 (29 - 112)
SWISS-MODEL, model-2 (18 - 68)
SWISS-MODEL, model-3 (24 - 67)
IntFOLD3-TS, model-1 (1 - 133)
IntFOLD3-TS, model-2 (1 - 133)
IntFOLD3-TS, model-3 (1 - 133)
IntFOLD3-TS, model-4 (1 - 133)
IntFOLD3-TS, model-5 (1 - 133)
NaiveBLAST, model-1 (49 - 106)
IntFOLD4-TS, model-1 (1 - 133)
IntFOLD4-TS, model-2 (1 - 133)
IntFOLD4-TS, model-3 (1 - 133)
IntFOLD4-TS, model-4 (1 - 133)
IntFOLD4-TS, model-5 (1 - 133)
PRIMO, model-1 (1 - 133)
PRIMO_HHS_CL, model-1 (27 - 111)
IntFOLD5-TS, model-1 (1 - 133)
IntFOLD5-TS, model-2 (1 - 133)
IntFOLD5-TS, model-3 (1 - 133)
IntFOLD5-TS, model-4 (1 - 133)
IntFOLD5-TS, model-5 (1 - 133)
IntFOLD6-TS, model-1 (1 - 133)
IntFOLD6-TS, model-2 (1 - 133)
IntFOLD6-TS, model-3 (1 - 133)
IntFOLD6-TS, model-4 (1 - 133)
IntFOLD6-TS, model-5 (1 - 133)
pureAF2_orig, model-1 (1 - 133)
pureAF2_notemp, model-1 (1 - 133)
ZlxFold, model-1 (1 - 133)
Naive AlphaFoldDB 90, model-1 (1 - 133)
PaFold, model-1 (1 - 133)
HeliXonAI, model-1 (1 - 133)
PaFold_v2, model-1 (1 - 133)
RocketX, model-1 (1 - 133)
RocketX, model-10 (1 - 133)
RocketX, model-11 (1 - 133)
RocketX, model-12 (1 - 133)
RocketX, model-2 (1 - 133)
RocketX, model-3 (1 - 133)
RocketX, model-4 (1 - 133)
RocketX, model-5 (1 - 133)
RocketX, model-6 (1 - 133)
RocketX, model-7 (1 - 133)
RocketX, model-8 (1 - 133)
RocketX, model-9 (1 - 133)
BestSingleStructuralTemplate, model-1 (1 - 133)

Colors: Query Sequence | Target Structure Coordinates | Model #1 Coordinates

3D Prediction

Target Structure

Server Evaluations

Server Name
Predictions Resp. time
(hh:mm:ss)
From To Cov. (%) lDDT lDDT Cα Avg. lDDT-BS Avg. lDDT-BS details Model Conf. lDDT QS-score Oligo details QS-score Best Match lDDT Oligo MM-align TM-score MM-align RMSD QScore CAD-Score GDT_HA RMSD GDC Model Conf. MaxSub TM-score